MD Simulation Videos - LAMMPS Tube

Movies from LAMMPS Simulation Package

There are two kinds of molecular dynamics movies on this page. Some are from large-scale simulations performed with LAMMPS package. Others are simple animations that illustrate the kinds of simulations that LAMMPS package can be easliy used to run.

Reference Paper: Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees.

DOI: 10.1371/journal.pcbi.1004410.

Reference Paper: Formation of stable ultra-thin pentagon Cu nanowires under high strain rate loading.

DOI: 10.1088/0953-8984/20/33/335206.

Reference Paper: Probing Eukaryotic Cell Mechanics via Mesoscopic Simulations.

DOI: 10.1371/journal.pcbi.1005726.

Source: lammps.org

Reference Paper: Molecular Dynamics Simulations of Evaporation-induced Nanoparticle Assembly.

DOI: 10.1063/1.4789807.

Source: lammps.org

Reference Paper: Energy of slip Transmission and Nucleation at Grain Boundaries.

DOI: 10.1016/j.actamat.2010.09.032.

Reference Paper: Jamming in granular hopper flow.

DOI: 10.1103/PhysRevLett.86.71.

Reference Paper: Implementing Peridynamics Within a Molecular Dynamics Code.

DOI: 10.1016/j.cpc.2008.06.011.

Reference Paper: Rheological Study of Polymer Flow Past Rough Surfaces With Slip Boundary Conditions.

DOI: 10.1063/1.2988496.

Reference Paper: Surface Melting of Superheated Crystals. Atomistic Simulation Study.

DOI: 10.1016/j.cpc.2007.02.073.

Reference Paper: Cavitation in liquid metals under negative pressures. Molecular dynamics modeling and simulation.

DOI: 10.1088/0953-8984/20/11/114113.

Reference Paper: Dynamics and Structures of Segregation in a Dense, Vibrating Granular Bed.

DOI: 10.1103/PhysRevE.74.061307.

Reference Paper: Modeling Inelasticity and Failure in Gold Nanowires.

DOI: 10.1103/PhysRevB.72.054106.

Reference Paper: Molecular Dynamics Simulation of Dark-adapted Rhodopsin in an Explicit Membrane Bilayer: Coupling Between Local Retinal and Larger Scale Conformational Change.

DOI: 10.1016/j.jmb.2003.08.045.

Reference Paper: Atomistic Simulation Methods for Computing the Kinetic Coefficient in Solid-liquid Systems.

DOI: 10.1023/A:1015828330917.

Source: lammps.org

Source: YouTube.com

Reference Paper: Molecular dynamics simulations of evaporation-induced nanoparticle assembly.

DOI: 10.1063/1.4789807.

Reference Paper: Cavitation in liquid metals under negative pressures. Molecular dynamics modeling and simulation.

DOI: 10.1088/0953-8984/20/11/114113.

Reference Paper: A Method for Molecular Dynamics on Curved Surfaces.

DOI: 10.1016/j.bpj.2016.02.017.

Reference Paper: Size Effect in Compression of Single-crystal Gold Microparticles.

DOI: 10.1016/j.actamat.2011.04.057.

Reference Paper: Self-assembling nanofibers from thiophene-peptide diblock oligomers: a combined experimental and computer simulations study.

DOI: 10.1021/nn2011943.

Reference Paper: Size Effect in Compression of Single-crystal Gold Microparticles.

DOI: 10.1016/j.actamat.2011.04.057.

Reference Paper: Large-Scale, Long-Term Nonadiabatic Electron Molecular Dynamics for Describing Material Properties and Phenomena in Extreme Environments.

DOI: 10.1002/jcc.21637.